Cozy Pumpkin Spice Muffins Recipe
Bake up the flavors of fall with these homemade Pumpkin Spice Muffins made from scratch with real pumpkin puree, warm spices, and a sweet cinnamon-sugar topping. Perfect for cozy mornings and easy fall baking!

This post may contain affiliate links. As an amazon associate I earn from qualifying purchases at no additional cost to you.
Celebrate Fall with These Pumpkin Spice Muffins
There’s nothing quite like the cozy smell of pumpkin spice muffins baking in the oven on a crisp fall morning. These homemade muffins are everything you love about autumn—warm spices, a soft, moist crumb, and a crunchy cinnamon-sugar topping that makes every bite feel like a bakery treat. Made from scratch with real pumpkin puree and wholesome ingredients, these muffins are perfect for breakfast, a mid-morning snack, or paired with your favorite fall latte. At My Colorado Kitchen, I believe in creating recipes where real ingredients meet everyday cooking, and these pumpkin spice muffins are a delicious reminder that homemade is always worth it.
Why You’ll Love This Pumpkin Spice Muffin Recipe
- Real pumpkin flavor: No artificial flavoring, just pure pumpkin puree.
- Warm, cozy spices: A perfect blend of cinnamon, nutmeg, ginger, and cloves.
- Rich taste with a healthy twist: Coconut sugar adds a natural sweetness and depth of flavor.
- Moist and fluffy texture: Greek yogurt and butter keep these muffins soft and tender.
- Bakery-style finish: The turbinado cinnamon-sugar topping adds a beautiful crunch.
- Make-ahead friendly: These muffins store and freeze beautifully for busy mornings.

Ingredient Spotlight
Here’s what makes these muffins extra special:
- Pumpkin Puree: Use 100% pure pumpkin puree (not pumpkin pie filling) for the best flavor and texture.
- Coconut Sugar: Adds a rich, caramel-like sweetness that pairs perfectly with pumpkin.
- Warm Fall Spices: Cinnamon, nutmeg, ginger, and cloves create that iconic pumpkin spice flavor.
- Greek Yogurt: Adds moisture and protein while keeping the muffins light. Just make sure it is plain greek yogurt.
- Turbinado Sugar Topping: A crunchy, golden finish that makes these feel bakery-quality.
Tools You’ll Need
This post may contain affiliate links. As an amazon associate I earn from qualifying purchases at no additional cost to you.
Step-by-Step Instructions
- Preheat oven to 400°F. Line a muffin tin with paper or silicone liners or use this silicone muffin tin.
- Mix dry ingredients: In a medium bowl, whisk together the flour, baking powder, salt, cinnamon, nutmeg, cloves, and ginger. Set aside.
- Whisk wet ingredients: In a large bowl, mix together the pumpkin puree, greek yogurt, sugar, coconut sugar, eggs, melted butter, and vanilla until smooth.
- Combine: Gently fold the dry ingredients into the wet ingredients until just combined. Do not overmix—this keeps your muffins light and fluffy.
- Fill muffin cups: Scoop batter evenly into the prepared muffin tin, filling each cup almost to the top. I like to use my 4 Tbsp ice cream scoop for this.
- Make topping: In a small bowl, mix the turbinado sugar and cinnamon. Sprinkle generously over each muffin.
- Bake: Place in the 400°F oven and bake for 5 minutes. After 5 minutes reduce the heat to 375°F and bake for 15 – 20 minutes or until a toothpick inserted into the center of a muffin comes out clean.
- Cool and enjoy: Let muffins cool in the pan for 5 minutes, then transfer to a wire rack. Serve warm or at room temperature.
Serving Suggestions
- Pair with a steaming mug of chai tea or your favorite pumpkin spice latte.
- Spread with a little butter or homemade whipped cream cheese.
- Serve as part of a fall breakfast spread with fresh fruit and scrambled eggs.
- Drizzle with a light glaze for a dessert-worthy treat.
Storage and Freezing Tips
- Room Temperature: Store muffins in an airtight container at room temperature for up to 3 days.
- Refrigerator: Keep in the fridge for up to a week for longer storage.
- Freezer: Wrap each muffin individually and freeze for up to 3 months. Thaw overnight or warm in the microwave for 20 seconds.

FAQ
Can I use fresh pumpkin instead of canned?
Yes! Roast and puree fresh pumpkin, but make sure it’s well-drained to avoid excess moisture.
Can I substitute whole wheat flour?
Yes. Substitute half the all-purpose flour with whole wheat for a heartier texture.
How do I make these dairy-free?
Use coconut yogurt and plant-based butter for a dairy-free version.
Can I add chocolate chips or nuts?
Absolutely! Add up to 1 cup of mix-ins for extra flavor and texture.
I’d love to see your cozy fall bakes! If you make these Pumpkin Spice Muffins, snap a photo and tag me on instagram @my.colorado.kitchen. Don’t forget to sign up for my newsletter for more from-scratch seasonal recipes made with real ingredients. And if you’re a muffin lover, check out my homemade whole wheat yogurt muffins to pair with these muffins for the ultimate fall breakfast spread.
Pumpkin Spice Muffins
Bake up the flavors of fall with these homemade Pumpkin Spice Muffins made from scratch with real pumpkin puree, warm spices, and a sweet cinnamon-sugar topping. Perfect for cozy mornings and easy fall baking!
Ingredients
- 1¾ cups all-purpose flour
- 2 tsp baking powder
- ½ tsp salt
- 1½ tsp cinnamon
- ½ tsp nutmeg
- ¼ tsp cloves
- ¼ tsp ginger
- 1 cup pumpkin puree
- 2 large eggs
- ½ cup Greek yogurt
- ½ cup sugar
- ½ cup coconut sugar
- ¼ cup butter, melted
- 1 tsp vanilla extract
Topping
- ½ cup turbinado sugar
- 1 tsp cinnamon
Instructions
- Preheat oven to 400°F. Line a muffin tin with paper or silicone liners or use this silicone muffin tin.
- Mix dry ingredients: In a medium bowl, whisk together the flour, baking powder, salt, cinnamon, nutmeg, cloves, and ginger. Set aside.
- Whisk wet ingredients: In a large bowl, mix together the pumpkin puree, greek yogurt, sugar, coconut sugar, eggs, melted butter, and vanilla until smooth.
- Combine: Gently fold the dry ingredients into the wet ingredients until just combined. Do not overmix—this keeps your muffins light and fluffy.
- Fill muffin cups: Scoop batter evenly into the prepared muffin tin, filling each cup almost to the top. I like to use my 4 Tbsp ice cream scoop for this.
- Make topping: In a small bowl, mix the turbinado sugar and cinnamon. Sprinkle generously over each muffin.
- Bake: Place in the 400°F oven and bake for 5 minutes. After 5 minutes reduce the heat to 375°F and bake for 15 - 20 minutes or until a toothpick inserted into the center of a muffin comes out clean.
- Cool and enjoy: Let muffins cool in the pan for 5 minutes, then transfer to a wire rack. Serve warm or at room temperature.
Notes
Storage and Freezing Tips
- Room Temperature: Store muffins in an airtight container at room temperature for up to 3 days.
- Refrigerator: Keep in the fridge for up to a week for longer storage.
- Freezer: Wrap each muffin individually and freeze for up to 3 months. Thaw overnight or warm in the microwave for 20 seconds.
Nutrition Information:
Yield: 12 Serving Size: 1 MuffinAmount Per Serving: Calories: 225Total Fat: 5gSaturated Fat: 3gTrans Fat: 0gUnsaturated Fat: 2gCholesterol: 42mgSodium: 226mgCarbohydrates: 41gFiber: 1gSugar: 26gProtein: 4g
Nutrition facts are calculated automatically and are approximate.
